5ttgen |
Generate a 5TT image suitable for ACT |
dwi2response |
Estimate response function(s) for spherical deconvolution |
dwibiascorrect |
Perform B1 field inhomogeneity correction for a DWI volume series |
dwigradcheck |
Check the orientation of the diffusion gradient table |
dwiintensitynorm |
Performs a global DWI intensity normalisation on a group of subjects using the median b=0 white matter value as the reference |
dwipreproc |
Perform diffusion image pre-processing using FSL’s eddy tool; including inhomogeneity distortion correction using FSL’s topup tool if possible |
labelsgmfix |
In a FreeSurfer parcellation image, replace the sub-cortical grey matter structure delineations using FSL FIRST |
population_template |
Generates an unbiased group-average template from a series of images |