MRtrix
0.3.16
Install
Before you install
Linux installation
MacOS X installation
Windows installation
HPC clusters installation
Getting started
Key features
Configuration file
Images and other data
Command-line usage
Troubleshooting
Tutorials
Basic DWI processing
DWI denoising
Structural connectome for Human Connectome Project (HCP)
Using the connectome visualisation tool
Structural connectome construction: Using
labelconvert
Advanced debugging
Warping images using warps generated from other packages
Frequently Asked Questions (FAQ)
Workflows
DWI Pre-processing for Quantitative Analysis
Fixel-Based Analysis (FBA)
Anatomically-Constrained Tractography (ACT)
Spherical-deconvolution Informed Filtering of Tractograms (SIFT)
Structural connectome construction
Global tractography
Multi-tissue constrained spherical deconvolution
Concepts
Diffusion gradient scheme handling
Orthonormal Spherical Harmonic basis
Dixels and Fixels
Motivation for
afdconnectivity
Response function estimation
Reference
List of MRtrix3 commands
Python scripts provided with MRtrix3
List of MRtrix3 configuration file options
MRtrix 0.2 equivalent commands
MRtrix
Docs
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Index
Edit on GitHub
Index
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v: 0.3.16
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